J3_4Z8C_016

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4Z8C|1|2A|G|732, 4Z8C|1|2A|G|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Z8C_016 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.0449

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4Z8C|1|2A|C|729
4Z8C|1|2A|G|730
4Z8C|1|2A|A|731
4Z8C|1|2A|G|732
4Z8C|1|2A|C|733
4Z8C|1|2A|U|734
4Z8C|1|2A|A|735
*
4Z8C|1|2A|U|819
4Z8C|1|2A|A|820
4Z8C|1|2A|G|821
*
4Z8C|1|2A|C|837
4Z8C|1|2A|G|838
4Z8C|1|2A|A|839
4Z8C|1|2A|G|840

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 27

50S ribosomal protein L34

Chain 2D

50S ribosomal protein L2