J3_4Z8C_028

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Z8C_028 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.1858

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

4Z8C|1|2a|C|968
4Z8C|1|2a|U|969
4Z8C|1|2a|U|970
4Z8C|1|2a|G|971
*
4Z8C|1|2a|C|1028
4Z8C|1|2a|A|1029
4Z8C|1|2a|G|1030
*
4Z8C|1|2a|C|1192
4Z8C|1|2a|U|1193
4Z8C|1|2a|U|1194
4Z8C|1|2a|A|1195
4Z8C|1|2a|C|1196
4Z8C|1|2a|G|1197

Current chains

Chain 2a

16S ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z