J3_4Z8C_055

3D structure

PDB id

4Z8C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome bound to translation inhibitor oncocin

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4Z8C|1|2A|U|287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4Z8C_055 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.1092

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4Z8C|1|2A|U|257
4Z8C|1|2A|A|258
4Z8C|1|2A|A|259
4Z8C|1|2A|A|260
4Z8C|1|2A|C|261
*
4Z8C|1|2A|G|281
4Z8C|1|2A|G|282
4Z8C|1|2A|G|283
4Z8C|1|2A|U|284
4Z8C|1|2A|C|285
4Z8C|1|2A|G|286
4Z8C|1|2A|U|287
4Z8C|1|2A|G|288
*
4Z8C|1|2A|C|395
4Z8C|1|2A|G|396

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2I

50S ribosomal protein L9