J3_4ZER_032

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

4ZER|1|2a|U|1240, 4ZER|1|2a|U|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZER_032 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.0962

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

4ZER|1|2a|C|1237
4ZER|1|2a|A|1238
4ZER|1|2a|A|1239
4ZER|1|2a|U|1240
4ZER|1|2a|G|1241
*
4ZER|1|2a|C|1296
4ZER|1|2a|C|1297
4ZER|1|2a|C|1298
4ZER|1|2a|A|1299
4ZER|1|2a|G|1300
4ZER|1|2a|U|1301
4ZER|1|2a|U|1302
4ZER|1|2a|C|1303
*
4ZER|1|2a|G|1334
4ZER|1|2a|C|1335
4ZER|1|2a|C|1336
4ZER|1|2a|G|1337

Current chains

Chain 2a

16s ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx