J3_4ZER_034
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
- Length
- 28 nucleotides
- Bulged bases
- 4ZER|1|1A|U|529, 4ZER|1|1A|G|533
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4ZER_034 not in the Motif Atlas
- Homologous match to J3_9DFE_002
- Geometric discrepancy: 0.0458
- The information below is about J3_9DFE_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4ZER|1|1A|G|30
4ZER|1|1A|C|31
*
4ZER|1|1A|G|500
4ZER|1|1A|U|501
4ZER|1|1A|G|502
4ZER|1|1A|A|503
4ZER|1|1A|A|504
4ZER|1|1A|A|505
4ZER|1|1A|A|506
4ZER|1|1A|G|507
4ZER|1|1A|A|508
4ZER|1|1A|A|509
4ZER|1|1A|C|510
*
4ZER|1|1A|G|521
4ZER|1|1A|A|522
4ZER|1|1A|G|523
4ZER|1|1A|U|524
4ZER|1|1A|G|525
4ZER|1|1A|A|526
4ZER|1|1A|A|527
4ZER|1|1A|A|528
4ZER|1|1A|U|529
4ZER|1|1A|A|530
4ZER|1|1A|G|531
4ZER|1|1A|A|532
4ZER|1|1A|G|533
4ZER|1|1A|C|534
4ZER|1|1A|C|535
Current chains
- Chain 1A
- 23s ribosomal RNA
Nearby chains
- Chain 1U
- 50S ribosomal protein L20
- Chain 1W
- 50S ribosomal protein L22
- Chain 1Y
- 50S ribosomal protein L24
Coloring options: