J3_4ZER_037

3D structure

PDB id

4ZER (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAAAC*GGGUCGUG*CG

Length

15 nucleotides

Bulged bases

4ZER|1|1A|U|288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZER_037 not in the Motif Atlas

Homologous match to J3_9DFE_005

Geometric discrepancy: 0.0955

The information below is about J3_9DFE_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

4ZER|1|1A|U|258
4ZER|1|1A|A|259
4ZER|1|1A|A|260
4ZER|1|1A|A|261
4ZER|1|1A|C|262
*
4ZER|1|1A|G|282
4ZER|1|1A|G|283
4ZER|1|1A|G|284
4ZER|1|1A|U|285
4ZER|1|1A|C|286
4ZER|1|1A|G|287
4ZER|1|1A|U|288
4ZER|1|1A|G|289
*
4ZER|1|1A|C|396
4ZER|1|1A|G|397

Current chains

Chain 1A

23s ribosomal RNA

Nearby chains

Chain 1I

50S ribosomal protein L9