J3_4ZER_065
3D structure
- PDB id
- 4ZER (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Onc112 antimicrobial peptide bound to the Thermus thermophilus 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 4ZER|1|2a|A|653
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4ZER_065 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0874
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4ZER|1|2a|C|586
4ZER|1|2a|G|587
4ZER|1|2a|G|588
*
4ZER|1|2a|C|651
4ZER|1|2a|U|652
4ZER|1|2a|A|653
4ZER|1|2a|G|654
4ZER|1|2a|A|655
*
4ZER|1|2a|U|751
4ZER|1|2a|G|752
4ZER|1|2a|A|753
4ZER|1|2a|C|754
4ZER|1|2a|G|755
Current chains
- Chain 2a
- 16s ribosomal RNA
Nearby chains
- Chain 2h
- 30S ribosomal protein S8
- Chain 2l
- 30S ribosomal protein S12
- Chain 2o
- 30S ribosomal protein S15
- Chain 2q
- 30S ribosomal protein S17
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