J3_4ZSN_025

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4ZSN|1|RA|A|2518, 4ZSN|1|RA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZSN_025 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1153

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

4ZSN|1|RA|C|2517
4ZSN|1|RA|A|2518
4ZSN|1|RA|U|2519
4ZSN|1|RA|C|2520
*
4ZSN|1|RA|G|2545
4ZSN|1|RA|U|2546
4ZSN|1|RA|U|2547
*
4ZSN|1|RA|A|2561
4ZSN|1|RA|U|2562
4ZSN|1|RA|U|2563
4ZSN|1|RA|A|2564
4ZSN|1|RA|A|2565
4ZSN|1|RA|A|2566
4ZSN|1|RA|G|2567

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RN

50S ribosomal protein L13

Chain RO

50S ribosomal protein L14