J3_4ZSN_047

3D structure

PDB id

4ZSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-wild-type HigB toxin complex bound to a AAA lysine codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CGUAAG*CGG*UCAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4ZSN_047 not in the Motif Atlas

Homologous match to J3_7RQB_007

Geometric discrepancy: 0.0607

The information below is about J3_7RQB_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.3

Basepair signature

cWW-tSH-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

4ZSN|1|YA|C|1298
4ZSN|1|YA|G|1299
4ZSN|1|YA|U|1300
4ZSN|1|YA|A|1301
4ZSN|1|YA|A|1302
4ZSN|1|YA|G|1303
*
4ZSN|1|YA|C|1625
4ZSN|1|YA|G|1626
4ZSN|1|YA|G|1627
*
4ZSN|1|YA|U|1639
4ZSN|1|YA|C|1640
4ZSN|1|YA|A|1641
4ZSN|1|YA|G|1642

Current chains

Chain YA

23S rRNA

Nearby chains