J3_5A2Q_010

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5A2Q_010 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1039

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5A2Q|1|2|A|40
5A2Q|1|2|G|41
*
5A2Q|1|2|C|481
5A2Q|1|2|G|482
5A2Q|1|2|C|483
5A2Q|1|2|A|484
5A2Q|1|2|A|485
5A2Q|1|2|A|486
5A2Q|1|2|U|487
*
5A2Q|1|2|A|512
5A2Q|1|2|G|513
5A2Q|1|2|U|514

Current chains

Chain 2

18S RRNA

Nearby chains

Chain J

RIBOSOMAL PROTEIN US4

Chain X

RIBOSOMAL PROTEIN US12