J3_5A2Q_011

3D structure

PDB id

5A2Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5A2Q_011 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1063

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

5A2Q|1|2|U|1350
5A2Q|1|2|G|1351
*
5A2Q|1|2|U|1360
5A2Q|1|2|G|1361
5A2Q|1|2|U|1362
5A2Q|1|2|C|1363
*
5A2Q|1|2|G|1375
5A2Q|1|2|A|1376
5A2Q|1|2|U|1377
5A2Q|1|2|A|1378
5A2Q|1|2|A|1379

Current chains

Chain 2

18S RRNA

Nearby chains

Chain A

RIBOSOMAL PROTEIN US2

Chain C

RIBOSOMAL PROTEIN US5

Chain R

RIBOSOMAL PROTEIN ES17