J3_5A9Z_006

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GUUG*CUAAC*GGACAGC

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5A9Z_006 not in the Motif Atlas

Geometric match to J3_4V9F_007

Geometric discrepancy: 0.299

The information below is about J3_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_86017.1

Basepair signature

cWW-F-F-F-F-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

5A9Z|1|AA|G|2090||||P_1
5A9Z|1|AA|U|2091||||P_1
5A9Z|1|AA|U|2092||||P_1
5A9Z|1|AA|G|2093||||P_1
*
5A9Z|1|AA|C|2196||||P_1
5A9Z|1|AA|U|2197||||P_1
5A9Z|1|AA|A|2198||||P_1
5A9Z|1|AA|A|2199||||P_1
5A9Z|1|AA|C|2205||||P_1
*
5A9Z|1|AA|G|2219||||P_1
5A9Z|1|AA|G|2224||||P_1
5A9Z|1|AA|A|2225||||P_1
5A9Z|1|AA|C|2226||||P_1
5A9Z|1|AA|A|2227||||P_1
5A9Z|1|AA|G|2228||||P_1
5A9Z|1|AA|C|2229||||P_1

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AD

50S ribosomal protein L2

Chain Aa

50S ribosomal protein L31