J3_5A9Z_037

3D structure

PDB id

5A9Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of Thermous thermophilus ribosome bound to BipA-GDPCP

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGC*GGACUGC*GAGGAAGGAG

Length

20 nucleotides

Bulged bases

5A9Z|1|BA|U|1159||||P_1, 5A9Z|1|BA|G|1181||||P_1, 5A9Z|1|BA|G|1182||||P_1, 5A9Z|1|BA|A|1183||||P_1

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5A9Z_037 not in the Motif Atlas

Homologous match to J3_4LFB_018

Geometric discrepancy: 0.3584

The information below is about J3_4LFB_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17791.2

Basepair signature

cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5A9Z|1|BA|C|1116||||P_1
5A9Z|1|BA|G|1117||||P_1
5A9Z|1|BA|C|1118||||P_1
*
5A9Z|1|BA|G|1155||||P_1
5A9Z|1|BA|G|1156||||P_1
5A9Z|1|BA|A|1157||||P_1
5A9Z|1|BA|C|1158||||P_1
5A9Z|1|BA|U|1159||||P_1
5A9Z|1|BA|G|1160||||P_1
5A9Z|1|BA|C|1161||||P_1
*
5A9Z|1|BA|G|1175||||P_1
5A9Z|1|BA|A|1176||||P_1
5A9Z|1|BA|G|1177||||P_1
5A9Z|1|BA|G|1178||||P_1
5A9Z|1|BA|A|1179||||P_1
5A9Z|1|BA|A|1180||||P_1
5A9Z|1|BA|G|1181||||P_1
5A9Z|1|BA|G|1182||||P_1
5A9Z|1|BA|A|1183||||P_1
5A9Z|1|BA|G|1184||||P_1

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BF

30S ribosomal protein S2

Chain BM

30S ribosomal protein S9

Chain BR

30S ribosomal protein S14 type Z