J3_5AA0_008
3D structure
- PDB id
- 5AA0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of Thermous thermophilus ribosome (A-and P-site tRNA) bound to BipA-GDPCP
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CAUC*GUU*AUUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 5AA0|1|AA|A|2518||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AA0_008 not in the Motif Atlas
- Homologous match to J3_7RQB_012
- Geometric discrepancy: 0.1698
- The information below is about J3_7RQB_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_32601.3
- Basepair signature
- cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AA0|1|AA|C|2517||||P_1
5AA0|1|AA|A|2518||||P_1
5AA0|1|AA|U|2519||||P_1
5AA0|1|AA|C|2520||||P_1
*
5AA0|1|AA|G|2545||||P_1
5AA0|1|AA|U|2546||||P_1
5AA0|1|AA|U|2547||||P_1
*
5AA0|1|AA|A|2561||||P_1
5AA0|1|AA|U|2562||||P_1
5AA0|1|AA|U|2563||||P_1
5AA0|1|AA|A|2564||||P_1
5AA0|1|AA|A|2565||||P_1
5AA0|1|AA|A|2566||||P_1
5AA0|1|AA|G|2567||||P_1
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AK
- 50S ribosomal protein L13
- Chain AL
- 50S ribosomal protein L14
- Chain Af
- 50S ribosomal protein L36
- Chain BZ
- GTP-binding protein
Coloring options: