J3_5ADY_003

3D structure

PDB id

5ADY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with HflX

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GCAG*CGAAC*GAUGAC

Length

15 nucleotides

Bulged bases

5ADY|1|B|A|764

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5ADY_003 not in the Motif Atlas

Geometric match to J3_5TBW_005

Geometric discrepancy: 0.3185

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5ADY|1|B|G|697
5ADY|1|B|C|698
5ADY|1|B|A|699
5ADY|1|B|G|700
*
5ADY|1|B|C|732
5ADY|1|B|G|733
5ADY|1|B|A|734
5ADY|1|B|A|735
5ADY|1|B|C|736
*
5ADY|1|B|G|760
5ADY|1|B|A|761
5ADY|1|B|U|762
5ADY|1|B|G|763
5ADY|1|B|A|764
5ADY|1|B|C|765

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2