J3_5ADY_007
3D structure
- PDB id
- 5ADY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of the 50S ribosome subunit bound with HflX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.5 Å
Loop
- Sequence
- CUG*CUAAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5ADY_007 not in the Motif Atlas
- Homologous match to J3_5J7L_044
- Geometric discrepancy: 0.1801
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
5ADY|1|B|C|2091
5ADY|1|B|U|2092
5ADY|1|B|G|2093
*
5ADY|1|B|C|2196
5ADY|1|B|U|2197
5ADY|1|B|A|2198
5ADY|1|B|A|2199
5ADY|1|B|C|2200
*
5ADY|1|B|G|2223
5ADY|1|B|G|2224
5ADY|1|B|A|2225
5ADY|1|B|C|2226
5ADY|1|B|A|2227
5ADY|1|B|G|2228
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain C
- 50S RIBOSOMAL PROTEIN L2
- Chain H
- 50S RIBOSOMAL PROTEIN L9
- Chain X
- 50S RIBOSOMAL PROTEIN L28
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