J3_5AFI_004
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CCCAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 5AFI|1|A|A|1609||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_004 not in the Motif Atlas
- Homologous match to J3_5J7L_042
- Geometric discrepancy: 0.1217
- The information below is about J3_5J7L_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19545.2
- Basepair signature
- cWW-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 6
Unit IDs
5AFI|1|A|C|1306||||P_1
5AFI|1|A|A|1307||||P_1
5AFI|1|A|A|1308||||P_1
5AFI|1|A|G|1309||||P_1
*
5AFI|1|A|C|1605||||P_1
5AFI|1|A|C|1606||||P_1
5AFI|1|A|C|1607||||P_1
5AFI|1|A|A|1608||||P_1
5AFI|1|A|A|1609||||P_1
5AFI|1|A|A|1610||||P_1
5AFI|1|A|C|1611||||P_1
*
5AFI|1|A|G|1620||||P_1
5AFI|1|A|U|1621||||P_1
5AFI|1|A|G|1622||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
Coloring options: