J3_5AFI_010
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAAC*GUUGAU*AAUGAAC
- Length
- 17 nucleotides
- Bulged bases
- 5AFI|1|A|U|2833||||P_1, 5AFI|1|A|A|2835||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_010 not in the Motif Atlas
- Homologous match to J3_5J7L_048
- Geometric discrepancy: 0.1563
- The information below is about J3_5J7L_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64069.1
- Basepair signature
- cWW-tHS-F-F-F-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
5AFI|1|A|G|2812||||P_1
5AFI|1|A|A|2813||||P_1
5AFI|1|A|A|2814||||P_1
5AFI|1|A|C|2815||||P_1
*
5AFI|1|A|G|2831||||P_1
5AFI|1|A|U|2832||||P_1
5AFI|1|A|U|2833||||P_1
5AFI|1|A|G|2834||||P_1
5AFI|1|A|A|2835||||P_1
5AFI|1|A|U|2836||||P_1
*
5AFI|1|A|A|2882||||P_1
5AFI|1|A|A|2883||||P_1
5AFI|1|A|U|2884||||P_1
5AFI|1|A|G|2885||||P_1
5AFI|1|A|A|2886||||P_1
5AFI|1|A|A|2887||||P_1
5AFI|1|A|C|2888||||P_1
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain D
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L17
- Chain S
- 50S ribosomal protein L22
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