J3_5AFI_033
3D structure
- PDB id
- 5AFI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UA*UACCGGUGG*CGG
- Length
- 14 nucleotides
- Bulged bases
- 5AFI|1|a|U|723||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AFI_033 not in the Motif Atlas
- Homologous match to J3_5J7L_003
- Geometric discrepancy: 0.1015
- The information below is about J3_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_11934.4
- Basepair signature
- cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AFI|1|a|U|672||||P_1
5AFI|1|a|A|673||||P_1
*
5AFI|1|a|U|717||||P_1
5AFI|1|a|A|718||||P_1
5AFI|1|a|C|719||||P_1
5AFI|1|a|C|720||||P_1
5AFI|1|a|G|721||||P_1
5AFI|1|a|G|722||||P_1
5AFI|1|a|U|723||||P_1
5AFI|1|a|G|724||||P_1
5AFI|1|a|G|725||||P_1
*
5AFI|1|a|C|732||||P_1
5AFI|1|a|G|733||||P_1
5AFI|1|a|G|734||||P_1
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain f
- 30S ribosomal protein S6
- Chain k
- 30S ribosomal protein S11
- Chain o
- 30S ribosomal protein S15
- Chain r
- 30S ribosomal protein S18
- Chain u
- 30S ribosomal protein S21
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