J3_5AJ0_001

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGCGCC*GCGUACGG*CCGG

Length

19 nucleotides

Bulged bases

5AJ0|1|A2|G|157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|C|112
5AJ0|1|A2|A|113
5AJ0|1|A2|G|114
5AJ0|1|A2|C|115
5AJ0|1|A2|G|116
5AJ0|1|A2|C|117
5AJ0|1|A2|C|118
*
5AJ0|1|A2|G|151
5AJ0|1|A2|C|152
5AJ0|1|A2|G|153
5AJ0|1|A2|U|154
5AJ0|1|A2|A|155
5AJ0|1|A2|C|156
5AJ0|1|A2|G|157
5AJ0|1|A2|G|158
*
5AJ0|1|A2|C|269
5AJ0|1|A2|C|270
5AJ0|1|A2|G|271
5AJ0|1|A2|G|272

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AG

60S ribosomal protein L7a

Chain AL

60S ribosomal protein L13

Chain AN

60S ribosomal protein L15

Chain Ah

60S ribosomal protein L35

Chain Ai

60S ribosomal protein L36