J3_5AJ0_002

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGCAGUCC*GUGCG*CGACGUC

Length

21 nucleotides

Bulged bases

5AJ0|1|A2|U|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|G|442
5AJ0|1|A2|C|443
5AJ0|1|A2|G|444
5AJ0|1|A2|C|445
5AJ0|1|A2|A|446
5AJ0|1|A2|G|447
5AJ0|1|A2|U|448
5AJ0|1|A2|C|449
5AJ0|1|A2|C|450
*
5AJ0|1|A2|G|692
5AJ0|1|A2|U|693
5AJ0|1|A2|G|694
5AJ0|1|A2|C|695
5AJ0|1|A2|G|696
*
5AJ0|1|A2|C|1275
5AJ0|1|A2|G|1276
5AJ0|1|A2|A|1277
5AJ0|1|A2|C|1278
5AJ0|1|A2|G|1279
5AJ0|1|A2|U|1280
5AJ0|1|A2|C|1281

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AE

60S ribosomal protein L6

Chain Ae

60S ribosomal protein L32

Chain Af

60S ribosomal protein L35a