J3_5AJ0_010
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 5AJ0|1|A2|U|4086, 5AJ0|1|A2|U|4087, 5AJ0|1|A2|G|4090
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_010 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.3948
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5AJ0|1|A2|G|4061
5AJ0|1|A2|G|4062
5AJ0|1|A2|G|4063
5AJ0|1|A2|G|4064
*
5AJ0|1|A2|C|4083
5AJ0|1|A2|G|4084
5AJ0|1|A2|C|4085
5AJ0|1|A2|U|4086
5AJ0|1|A2|U|4087
5AJ0|1|A2|C|4088
5AJ0|1|A2|U|4089
5AJ0|1|A2|G|4090
5AJ0|1|A2|G|4091
5AJ0|1|A2|C|4092
5AJ0|1|A2|G|4093
5AJ0|1|A2|C|4094
5AJ0|1|A2|C|4095
5AJ0|1|A2|A|4096
5AJ0|1|A2|A|4097
5AJ0|1|A2|G|4098
*
5AJ0|1|A2|C|4117
5AJ0|1|A2|G|4118
5AJ0|1|A2|A|4119
5AJ0|1|A2|C|4120
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AA
- 60S ribosomal protein L8
- Chain AG
- 60S ribosomal protein L7a
- Chain AZ
- 60S ribosomal protein L27
- Chain Ac
- 60S ribosomal protein L30
- Chain Ag
- 60S ribosomal protein L34
- Chain Ap
- 60S ribosomal protein L37a
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