J3_5AJ0_014
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACGCAGCUAGCU*AUU*ACACU
- Length
- 20 nucleotides
- Bulged bases
- 5AJ0|1|A3|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_014 not in the Motif Atlas
- Geometric match to J3_4WF9_001
- Geometric discrepancy: 0.2417
- The information below is about J3_4WF9_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47707.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-cWW-F-F-cSH-cSH-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
5AJ0|1|A3|A|44
5AJ0|1|A3|C|45
5AJ0|1|A3|G|46
5AJ0|1|A3|C|47
5AJ0|1|A3|A|48
5AJ0|1|A3|G|49
5AJ0|1|A3|C|50
5AJ0|1|A3|U|51
5AJ0|1|A3|A|52
5AJ0|1|A3|G|53
5AJ0|1|A3|C|54
5AJ0|1|A3|U|55
*
5AJ0|1|A3|A|62
5AJ0|1|A3|U|63
5AJ0|1|A3|U|64
*
5AJ0|1|A3|A|95
5AJ0|1|A3|C|96
5AJ0|1|A3|A|97
5AJ0|1|A3|C|98
5AJ0|1|A3|U|99
Current chains
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AX
- 60S ribosomal protein L23a
- Chain Ah
- 60S ribosomal protein L35
- Chain Aj
- 60S ribosomal protein L37
- Chain Al
- 60S ribosomal protein L39
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