J3_5AJ0_017
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 5AJ0|1|B1|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_017 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1389
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5AJ0|1|B1|A|938
5AJ0|1|B1|U|939
5AJ0|1|B1|U|940
5AJ0|1|B1|C|941
*
5AJ0|1|B1|G|985
5AJ0|1|B1|G|986
5AJ0|1|B1|A|987
5AJ0|1|B1|C|988
5AJ0|1|B1|C|989
5AJ0|1|B1|A|990
5AJ0|1|B1|G|991
5AJ0|1|B1|A|992
5AJ0|1|B1|G|993
*
5AJ0|1|B1|C|1000
5AJ0|1|B1|A|1001
5AJ0|1|B1|U|1002
5AJ0|1|B1|U|1003
5AJ0|1|B1|U|1004
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain Ap
- 60S ribosomal protein L37a
- Chain BB
- 40S ribosomal protein S3a
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14
- Chain Ba
- 40S ribosomal protein S26
Coloring options: