J3_5AJ0_018

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

5AJ0|1|B1|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|C|1094
5AJ0|1|B1|C|1095
5AJ0|1|B1|G|1096
*
5AJ0|1|B1|U|1136
5AJ0|1|B1|U|1137
5AJ0|1|B1|C|1138
5AJ0|1|B1|C|1139
5AJ0|1|B1|G|1140
*
5AJ0|1|B1|C|1147
5AJ0|1|B1|A|1148
5AJ0|1|B1|A|1149
5AJ0|1|B1|A|1150
5AJ0|1|B1|G|1151

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BA

40S ribosomal protein SA

Chain BV

40S ribosomal protein S21

Chain BW

40S ribosomal protein S15a

Chain Ba

40S ribosomal protein S26

Chain Bb

40S ribosomal protein S27