J3_5AJ0_021
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUUAAUUU*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 5AJ0|1|B1|G|1256, 5AJ0|1|B1|A|1258, 5AJ0|1|B1|A|1260, 5AJ0|1|B1|U|1519
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ0_021 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.174
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5AJ0|1|B1|C|1237
5AJ0|1|B1|U|1238
5AJ0|1|B1|U|1239
5AJ0|1|B1|A|1240
5AJ0|1|B1|A|1241
5AJ0|1|B1|U|1242
5AJ0|1|B1|U|1243
5AJ0|1|B1|U|1244
*
5AJ0|1|B1|G|1255
5AJ0|1|B1|G|1256
5AJ0|1|B1|G|1257
5AJ0|1|B1|A|1258
5AJ0|1|B1|A|1259
5AJ0|1|B1|A|1260
5AJ0|1|B1|C|1261
5AJ0|1|B1|C|1262
5AJ0|1|B1|U|1263
5AJ0|1|B1|C|1264
5AJ0|1|B1|A|1265
5AJ0|1|B1|C|1266
*
5AJ0|1|B1|G|1516
5AJ0|1|B1|G|1517
5AJ0|1|B1|C|1518
5AJ0|1|B1|U|1519
5AJ0|1|B1|G|1520
Current chains
- Chain B1
- 18S ribosomal RNA
Nearby chains
- Chain BP
- 40S ribosomal protein S15
- Chain BS
- 40S ribosomal protein S18
- Chain BU
- 40S ribosomal protein S20
- Chain Bd
- 40S ribosomal protein S29
- Chain Bf
- Ubiquitin-40S ribosomal protein S27a
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