J3_5AJ0_026

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGCCCAAGUCC*GAGGCCCAGCC*GGACGGUGUGAGGCCGGUAGCGGC

Length

47 nucleotides

Bulged bases

5AJ0|1|A2|C|212, 5AJ0|1|A2|C|213, 5AJ0|1|A2|C|214, 5AJ0|1|A2|A|215, 5AJ0|1|A2|U|228, 5AJ0|1|A2|G|241

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|G|188
5AJ0|1|A2|G|189
5AJ0|1|A2|G|190
5AJ0|1|A2|C|191
5AJ0|1|A2|C|192
5AJ0|1|A2|C|193
5AJ0|1|A2|A|194
5AJ0|1|A2|A|195
5AJ0|1|A2|G|196
5AJ0|1|A2|U|197
5AJ0|1|A2|C|198
5AJ0|1|A2|C|199
*
5AJ0|1|A2|G|208
5AJ0|1|A2|A|209
5AJ0|1|A2|G|210
5AJ0|1|A2|G|211
5AJ0|1|A2|C|212
5AJ0|1|A2|C|213
5AJ0|1|A2|C|214
5AJ0|1|A2|A|215
5AJ0|1|A2|G|216
5AJ0|1|A2|C|217
5AJ0|1|A2|C|218
*
5AJ0|1|A2|G|222
5AJ0|1|A2|G|223
5AJ0|1|A2|A|224
5AJ0|1|A2|C|225
5AJ0|1|A2|G|226
5AJ0|1|A2|G|227
5AJ0|1|A2|U|228
5AJ0|1|A2|G|229
5AJ0|1|A2|U|230
5AJ0|1|A2|G|231
5AJ0|1|A2|A|232
5AJ0|1|A2|G|233
5AJ0|1|A2|G|234
5AJ0|1|A2|C|235
5AJ0|1|A2|C|236
5AJ0|1|A2|G|237
5AJ0|1|A2|G|238
5AJ0|1|A2|U|239
5AJ0|1|A2|A|240
5AJ0|1|A2|G|241
5AJ0|1|A2|C|242
5AJ0|1|A2|G|243
5AJ0|1|A2|G|244
5AJ0|1|A2|C|245

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AC

60S ribosomal protein L4

Chain AY

60S ribosomal protein L26

Chain Aj

60S ribosomal protein L37