J3_5AJ0_031

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UU*AGAAGC*GGUGGA

Length

14 nucleotides

Bulged bases

5AJ0|1|A2|A|1787, 5AJ0|1|A2|G|1816

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|A2|U|1708
5AJ0|1|A2|U|1709
*
5AJ0|1|A2|A|1784
5AJ0|1|A2|G|1785
5AJ0|1|A2|A|1786
5AJ0|1|A2|A|1787
5AJ0|1|A2|G|1788
5AJ0|1|A2|C|1789
*
5AJ0|1|A2|G|1813
5AJ0|1|A2|G|1814
5AJ0|1|A2|U|1815
5AJ0|1|A2|G|1816
5AJ0|1|A2|G|1817
5AJ0|1|A2|A|1818

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L7

Chain AT

60S ribosomal protein L21

Chain Ab

60S ribosomal protein L29