J3_5AJ0_033
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 5AJ0|1|A2|C|2449, 5AJ0|1|A2|A|2451, 5AJ0|1|A2|G|2454, 5AJ0|1|A2|G|2482, 5AJ0|1|A2|C|2484
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|A|2430
5AJ0|1|A2|G|2431
5AJ0|1|A2|A|2432
5AJ0|1|A2|U|2433
5AJ0|1|A2|G|2434
5AJ0|1|A2|G|2435
*
5AJ0|1|A2|C|2444
5AJ0|1|A2|G|2445
5AJ0|1|A2|U|2446
5AJ0|1|A2|U|2447
5AJ0|1|A2|C|2448
5AJ0|1|A2|C|2449
5AJ0|1|A2|G|2450
5AJ0|1|A2|A|2451
5AJ0|1|A2|A|2452
5AJ0|1|A2|G|2453
5AJ0|1|A2|G|2454
5AJ0|1|A2|G|2455
*
5AJ0|1|A2|C|2480
5AJ0|1|A2|G|2481
5AJ0|1|A2|G|2482
5AJ0|1|A2|C|2483
5AJ0|1|A2|C|2484
5AJ0|1|A2|G|2485
5AJ0|1|A2|A|2486
5AJ0|1|A2|U|2487
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S ribosomal protein L8
- Chain AG
- 60S ribosomal protein L7a
- Chain AN
- 60S ribosomal protein L15
- Chain AX
- 60S ribosomal protein L23a
- Chain Aj
- 60S ribosomal protein L37
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