3D structure

PDB id
5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo electron microscopy of actively translating human polysomes (POST state).
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGGUUGGCCUCGGAUAGCCGGUC*GGGUCCGGUGCGGAGUGCCCUUC*GCACCGCACGUUCGUG
Length
62 nucleotides
Bulged bases
5AJ0|1|A2|C|4718, 5AJ0|1|A2|C|4719, 5AJ0|1|A2|U|4725, 5AJ0|1|A2|U|4827, 5AJ0|1|A2|G|4828, 5AJ0|1|A2|G|4830, 5AJ0|1|A2|A|4832, 5AJ0|1|A2|G|4833, 5AJ0|1|A2|U|4839, 5AJ0|1|A2|U|4840, 5AJ0|1|A2|A|4896, 5AJ0|1|A2|C|4898, 5AJ0|1|A2|A|4901, 5AJ0|1|A2|C|4902, 5AJ0|1|A2|U|4908
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5AJ0|1|A2|C|4711
5AJ0|1|A2|G|4712
5AJ0|1|A2|G|4713
5AJ0|1|A2|U|4714
5AJ0|1|A2|U|4715
5AJ0|1|A2|G|4716
5AJ0|1|A2|G|4717
5AJ0|1|A2|C|4718
5AJ0|1|A2|C|4719
5AJ0|1|A2|U|4720
5AJ0|1|A2|C|4721
5AJ0|1|A2|G|4722
5AJ0|1|A2|G|4723
5AJ0|1|A2|A|4724
5AJ0|1|A2|U|4725
5AJ0|1|A2|A|4726
5AJ0|1|A2|G|4727
5AJ0|1|A2|C|4728
5AJ0|1|A2|C|4729
5AJ0|1|A2|G|4730
5AJ0|1|A2|G|4731
5AJ0|1|A2|U|4732
5AJ0|1|A2|C|4733
*
5AJ0|1|A2|G|4819
5AJ0|1|A2|G|4820
5AJ0|1|A2|G|4821
5AJ0|1|A2|U|4822
5AJ0|1|A2|C|4823
5AJ0|1|A2|C|4824
5AJ0|1|A2|G|4825
5AJ0|1|A2|G|4826
5AJ0|1|A2|U|4827
5AJ0|1|A2|G|4828
5AJ0|1|A2|C|4829
5AJ0|1|A2|G|4830
5AJ0|1|A2|G|4831
5AJ0|1|A2|A|4832
5AJ0|1|A2|G|4833
5AJ0|1|A2|U|4834
5AJ0|1|A2|G|4835
5AJ0|1|A2|C|4836
5AJ0|1|A2|C|4837
5AJ0|1|A2|C|4838
5AJ0|1|A2|U|4839
5AJ0|1|A2|U|4840
5AJ0|1|A2|C|4841
*
5AJ0|1|A2|G|4894
5AJ0|1|A2|C|4895
5AJ0|1|A2|A|4896
5AJ0|1|A2|C|4897
5AJ0|1|A2|C|4898
5AJ0|1|A2|G|4899
5AJ0|1|A2|C|4900
5AJ0|1|A2|A|4901
5AJ0|1|A2|C|4902
5AJ0|1|A2|G|4903
5AJ0|1|A2|U|4904
5AJ0|1|A2|U|4905
5AJ0|1|A2|C|4906
5AJ0|1|A2|G|4907
5AJ0|1|A2|U|4908
5AJ0|1|A2|G|4909

Current chains

Chain A2
28S ribosomal RNA

Nearby chains

Chain AE
60S ribosomal protein L6
Chain AH
60S ribosomal protein L9
Chain AM
60S ribosomal protein L14
Chain AO
60S ribosomal protein L13a
Chain AS
60S ribosomal protein L18a
Chain Af
60S ribosomal protein L35a

Coloring options:

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