J3_5AJ0_037
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGGUUGGCCUCGGAUAGCCGGUC*GGGUCCGGUGCGGAGUGCCCUUC*GCACCGCACGUUCGUG
- Length
- 62 nucleotides
- Bulged bases
- 5AJ0|1|A2|C|4718, 5AJ0|1|A2|C|4719, 5AJ0|1|A2|U|4725, 5AJ0|1|A2|U|4827, 5AJ0|1|A2|G|4828, 5AJ0|1|A2|G|4830, 5AJ0|1|A2|A|4832, 5AJ0|1|A2|G|4833, 5AJ0|1|A2|U|4839, 5AJ0|1|A2|U|4840, 5AJ0|1|A2|A|4896, 5AJ0|1|A2|C|4898, 5AJ0|1|A2|A|4901, 5AJ0|1|A2|C|4902, 5AJ0|1|A2|U|4908
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|C|4711
5AJ0|1|A2|G|4712
5AJ0|1|A2|G|4713
5AJ0|1|A2|U|4714
5AJ0|1|A2|U|4715
5AJ0|1|A2|G|4716
5AJ0|1|A2|G|4717
5AJ0|1|A2|C|4718
5AJ0|1|A2|C|4719
5AJ0|1|A2|U|4720
5AJ0|1|A2|C|4721
5AJ0|1|A2|G|4722
5AJ0|1|A2|G|4723
5AJ0|1|A2|A|4724
5AJ0|1|A2|U|4725
5AJ0|1|A2|A|4726
5AJ0|1|A2|G|4727
5AJ0|1|A2|C|4728
5AJ0|1|A2|C|4729
5AJ0|1|A2|G|4730
5AJ0|1|A2|G|4731
5AJ0|1|A2|U|4732
5AJ0|1|A2|C|4733
*
5AJ0|1|A2|G|4819
5AJ0|1|A2|G|4820
5AJ0|1|A2|G|4821
5AJ0|1|A2|U|4822
5AJ0|1|A2|C|4823
5AJ0|1|A2|C|4824
5AJ0|1|A2|G|4825
5AJ0|1|A2|G|4826
5AJ0|1|A2|U|4827
5AJ0|1|A2|G|4828
5AJ0|1|A2|C|4829
5AJ0|1|A2|G|4830
5AJ0|1|A2|G|4831
5AJ0|1|A2|A|4832
5AJ0|1|A2|G|4833
5AJ0|1|A2|U|4834
5AJ0|1|A2|G|4835
5AJ0|1|A2|C|4836
5AJ0|1|A2|C|4837
5AJ0|1|A2|C|4838
5AJ0|1|A2|U|4839
5AJ0|1|A2|U|4840
5AJ0|1|A2|C|4841
*
5AJ0|1|A2|G|4894
5AJ0|1|A2|C|4895
5AJ0|1|A2|A|4896
5AJ0|1|A2|C|4897
5AJ0|1|A2|C|4898
5AJ0|1|A2|G|4899
5AJ0|1|A2|C|4900
5AJ0|1|A2|A|4901
5AJ0|1|A2|C|4902
5AJ0|1|A2|G|4903
5AJ0|1|A2|U|4904
5AJ0|1|A2|U|4905
5AJ0|1|A2|C|4906
5AJ0|1|A2|G|4907
5AJ0|1|A2|U|4908
5AJ0|1|A2|G|4909
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L6
- Chain AH
- 60S ribosomal protein L9
- Chain AM
- 60S ribosomal protein L14
- Chain AO
- 60S ribosomal protein L13a
- Chain AS
- 60S ribosomal protein L18a
- Chain Af
- 60S ribosomal protein L35a
Coloring options: