J3_5AJ0_040

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGAUCAAAACCAACC*GCUUUG*CUAG

Length

26 nucleotides

Bulged bases

5AJ0|1|B1|C|228, 5AJ0|1|B1|A|229, 5AJ0|1|B1|C|284, 5AJ0|1|B1|U|285, 5AJ0|1|B1|U|286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AJ0|1|B1|C|223
5AJ0|1|B1|A|224
5AJ0|1|B1|G|225
5AJ0|1|B1|A|226
5AJ0|1|B1|U|227
5AJ0|1|B1|C|228
5AJ0|1|B1|A|229
5AJ0|1|B1|A|230
5AJ0|1|B1|A|231
5AJ0|1|B1|A|232
5AJ0|1|B1|C|233
5AJ0|1|B1|C|234
5AJ0|1|B1|A|235
5AJ0|1|B1|A|236
5AJ0|1|B1|C|237
5AJ0|1|B1|C|238
*
5AJ0|1|B1|G|283
5AJ0|1|B1|C|284
5AJ0|1|B1|U|285
5AJ0|1|B1|U|286
5AJ0|1|B1|U|287
5AJ0|1|B1|G|288
*
5AJ0|1|B1|C|295
5AJ0|1|B1|U|296
5AJ0|1|B1|A|297
5AJ0|1|B1|G|298

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BE

40S ribosomal protein S4, Y isoform 1

Chain BG

40S ribosomal protein S6

Chain BI

40S ribosomal protein S8

Chain BL

40S ribosomal protein S11