J3_5AJ0_042
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- ACC*GAGGGAGCGAGACCCGUCGCCGC*GCACGGGGU
- Length
- 35 nucleotides
- Bulged bases
- 5AJ0|1|A2|A|947, 5AJ0|1|A2|G|950, 5AJ0|1|A2|A|953, 5AJ0|1|A2|C|954, 5AJ0|1|A2|C|955, 5AJ0|1|A2|C|956, 5AJ0|1|A2|G|957, 5AJ0|1|A2|U|958, 5AJ0|1|A2|G|1264
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5AJ0|1|A2|A|702
5AJ0|1|A2|C|703
5AJ0|1|A2|C|704
*
5AJ0|1|A2|G|942
5AJ0|1|A2|A|943
5AJ0|1|A2|G|944
5AJ0|1|A2|G|945
5AJ0|1|A2|G|946
5AJ0|1|A2|A|947
5AJ0|1|A2|G|948
5AJ0|1|A2|C|949
5AJ0|1|A2|G|950
5AJ0|1|A2|A|951
5AJ0|1|A2|G|952
5AJ0|1|A2|A|953
5AJ0|1|A2|C|954
5AJ0|1|A2|C|955
5AJ0|1|A2|C|956
5AJ0|1|A2|G|957
5AJ0|1|A2|U|958
5AJ0|1|A2|C|959
5AJ0|1|A2|G|960
5AJ0|1|A2|C|961
5AJ0|1|A2|C|962
5AJ0|1|A2|G|963
5AJ0|1|A2|C|964
*
5AJ0|1|A2|G|1260
5AJ0|1|A2|C|1261
5AJ0|1|A2|A|1262
5AJ0|1|A2|C|1263
5AJ0|1|A2|G|1264
5AJ0|1|A2|G|1265
5AJ0|1|A2|G|1266
5AJ0|1|A2|G|1267
5AJ0|1|A2|U|1268
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L4
- Chain AE
- 60S ribosomal protein L6
- Chain AF
- 60S ribosomal protein L7
- Chain Ae
- 60S ribosomal protein L32
- Chain Af
- 60S ribosomal protein L35a
- Chain At
- 60S ribosomal protein L28
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