J3_5AJ3_009
3D structure
- PDB id
- 5AJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the small subunit of the mammalian mitoribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CACC*GCAGUAA*UGAAUAAG
- Length
- 19 nucleotides
- Bulged bases
- 5AJ3|1|A|A|822
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AJ3_009 not in the Motif Atlas
- Homologous match to J3_5J7L_052
- Geometric discrepancy: 0.4686
- The information below is about J3_5J7L_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.4
- Basepair signature
- cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
- Number of instances in this motif group
- 4
Unit IDs
5AJ3|1|A|C|542
5AJ3|1|A|A|543
5AJ3|1|A|C|544
5AJ3|1|A|C|545
*
5AJ3|1|A|G|788
5AJ3|1|A|C|789
5AJ3|1|A|A|790
5AJ3|1|A|G|791
5AJ3|1|A|U|792
5AJ3|1|A|A|793
5AJ3|1|A|A|794
*
5AJ3|1|A|U|816
5AJ3|1|A|G|817
5AJ3|1|A|A|818
5AJ3|1|A|A|819
5AJ3|1|A|U|820
5AJ3|1|A|A|821
5AJ3|1|A|A|822
5AJ3|1|A|G|823
Current chains
- Chain A
- MITORIBOSOMAL 12S RRNA
Nearby chains
- Chain G
- MITORIBOSOMAL PROTEIN US7M, MRPS7
- Chain I
- MITORIBOSOMAL PROTEIN US9M, MRPS9
- Chain m
- MITORIBOSOMAL PROTEIN MS37, MRPS37
Coloring options: