J3_5AJ4_012

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

5AJ4|1|BA|A|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ4_012 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.1311

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

5AJ4|1|BA|C|1338
5AJ4|1|BA|A|1339
5AJ4|1|BA|C|1340
5AJ4|1|BA|C|1341
*
5AJ4|1|BA|G|1366
5AJ4|1|BA|U|1367
5AJ4|1|BA|U|1368
*
5AJ4|1|BA|A|1382
5AJ4|1|BA|U|1383
5AJ4|1|BA|U|1384
5AJ4|1|BA|A|1385
5AJ4|1|BA|A|1386
5AJ4|1|BA|A|1387
5AJ4|1|BA|G|1388

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain BO

MITORIBOSOMAL PROTEIN UL14M, MRPL14

Chain Bt

MITORIBOSOMAL PROTEIN ML63, MRPL57

Chain Bx

MITORIBOSOMAL PROTEIN ML66, MRPS18A