J3_5AJ4_014

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACC*GCAGUAA*UGAAUAAG

Length

19 nucleotides

Bulged bases

5AJ4|1|AA|A|822

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AJ4_014 not in the Motif Atlas

Homologous match to J3_5J7L_052

Geometric discrepancy: 0.4862

The information below is about J3_5J7L_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5AJ4|1|AA|C|542
5AJ4|1|AA|A|543
5AJ4|1|AA|C|544
5AJ4|1|AA|C|545
*
5AJ4|1|AA|G|788
5AJ4|1|AA|C|789
5AJ4|1|AA|A|790
5AJ4|1|AA|G|791
5AJ4|1|AA|U|792
5AJ4|1|AA|A|793
5AJ4|1|AA|A|794
*
5AJ4|1|AA|U|816
5AJ4|1|AA|G|817
5AJ4|1|AA|A|818
5AJ4|1|AA|A|819
5AJ4|1|AA|U|820
5AJ4|1|AA|A|821
5AJ4|1|AA|A|822
5AJ4|1|AA|G|823

Current chains

Chain AA

MITORIBOSOMAL 12S Ribosomal RNA

Nearby chains

Chain AG

MITORIBOSOMAL PROTEIN US7M, MRPS7

Chain AI

MITORIBOSOMAL PROTEIN US9M, MRPS9

Chain Am

MITORIBOSOMAL PROTEIN MS37, MRPS37