J3_5AKA_001
3D structure
- PDB id
- 5AKA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EM structure of ribosome-SRP-FtsY complex in closed state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.7 Å
Loop
- Sequence
- GCCGUAG*CGC*GGAAC
- Length
- 15 nucleotides
- Bulged bases
- 5AKA|1|A|C|12, 5AKA|1|A|A|108
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5AKA_001 not in the Motif Atlas
- Homologous match to J3_5J7L_049
- Geometric discrepancy: 0.5708
- The information below is about J3_5J7L_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_89095.1
- Basepair signature
- cWW-F-F-F-tHS-F-cWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
5AKA|1|A|G|10
5AKA|1|A|C|11
5AKA|1|A|C|12
5AKA|1|A|G|13
5AKA|1|A|U|14
5AKA|1|A|A|15
5AKA|1|A|G|16
*
5AKA|1|A|C|68
5AKA|1|A|G|69
5AKA|1|A|C|70
*
5AKA|1|A|G|106
5AKA|1|A|G|107
5AKA|1|A|A|108
5AKA|1|A|A|109
5AKA|1|A|C|110
Current chains
- Chain A
- 5S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain O
- 50S RIBOSOMAL PROTEIN L18
- Chain V
- 50S RIBOSOMAL PROTEIN L25
- Chain W
- 50S RIBOSOMAL PROTEIN L27
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