J3_5AKA_003

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AKA_003 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0706

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5AKA|1|B|C|698
5AKA|1|B|A|699
5AKA|1|B|G|700
*
5AKA|1|B|C|732
5AKA|1|B|G|733
5AKA|1|B|A|734
5AKA|1|B|A|735
5AKA|1|B|C|736
*
5AKA|1|B|G|760
5AKA|1|B|A|761
5AKA|1|B|U|762
5AKA|1|B|G|763

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2