J3_5AKA_006

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

5AKA|1|B|A|1609

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AKA_006 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1624

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5AKA|1|B|C|1306
5AKA|1|B|A|1307
5AKA|1|B|A|1308
5AKA|1|B|G|1309
*
5AKA|1|B|C|1605
5AKA|1|B|C|1606
5AKA|1|B|C|1607
5AKA|1|B|A|1608
5AKA|1|B|A|1609
5AKA|1|B|A|1610
5AKA|1|B|C|1611
*
5AKA|1|B|G|1620
5AKA|1|B|U|1621
5AKA|1|B|G|1622

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34