J3_5AKA_015

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GGAAG*CG*CCCCGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5AKA|1|B|G|297
5AKA|1|B|G|298
5AKA|1|B|A|299
5AKA|1|B|A|300
5AKA|1|B|G|301
*
5AKA|1|B|C|316
5AKA|1|B|G|317
*
5AKA|1|B|C|334
5AKA|1|B|C|335
5AKA|1|B|C|336
5AKA|1|B|C|337
5AKA|1|B|G|338
5AKA|1|B|U|339
5AKA|1|B|A|340
5AKA|1|B|C|341

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain U

50S RIBOSOMAL PROTEIN L24