J3_5AKA_016

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UCGACCC*GGAAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5AKA_016 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.5368

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

5AKA|1|B|U|1344
5AKA|1|B|C|1345
5AKA|1|B|G|1346
5AKA|1|B|A|1347
5AKA|1|B|C|1348
5AKA|1|B|C|1349
5AKA|1|B|C|1350
*
5AKA|1|B|G|1381
5AKA|1|B|G|1382
5AKA|1|B|A|1383
5AKA|1|B|A|1384
5AKA|1|B|A|1385
*
5AKA|1|B|U|1402
5AKA|1|B|A|1403

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain T

50S RIBOSOMAL PROTEIN L23