J3_5APN_002

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GUGAACUA*UAG*CGAAC

Length

16 nucleotides

Bulged bases

5APN|1|5|A|817, 5APN|1|5|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5APN|1|5|G|813
5APN|1|5|U|814
5APN|1|5|G|815
5APN|1|5|A|816
5APN|1|5|A|817
5APN|1|5|C|818
5APN|1|5|U|819
5APN|1|5|A|820
*
5APN|1|5|U|905
5APN|1|5|A|906
5APN|1|5|G|907
*
5APN|1|5|C|923
5APN|1|5|G|924
5APN|1|5|A|925
5APN|1|5|A|926
5APN|1|5|C|927

Current chains

Chain 5

25S rRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain C

60S ribosomal protein L4-A

Chain j

60S ribosomal protein L37-A

Chain y

Cytoplasmic 60S subunit biogenesis factor REI1