J3_5APN_009

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CUC*GAAC*GUAAAAG

Length

14 nucleotides

Bulged bases

5APN|1|5|A|2703

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5APN|1|5|C|2664
5APN|1|5|U|2665
5APN|1|5|C|2666
*
5APN|1|5|G|2690
5APN|1|5|A|2691
5APN|1|5|A|2692
5APN|1|5|C|2693
*
5APN|1|5|G|2700
5APN|1|5|U|2701
5APN|1|5|A|2702
5APN|1|5|A|2703
5APN|1|5|A|2704
5APN|1|5|A|2705
5APN|1|5|G|2706

Current chains

Chain 5

25S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-A

Chain T

60S ribosomal protein L21-A

Chain o

60S ribosomal protein L42-A