J3_5APN_012
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- CAAAUUUGAAAU*AGUUGUAAUUUGGAG*CGAAG
- Length
- 32 nucleotides
- Bulged bases
- 5APN|1|5|U|117, 5APN|1|5|G|120, 5APN|1|5|A|121, 5APN|1|5|U|147, 5APN|1|5|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APN|1|5|C|113
5APN|1|5|A|114
5APN|1|5|A|115
5APN|1|5|A|116
5APN|1|5|U|117
5APN|1|5|U|118
5APN|1|5|U|119
5APN|1|5|G|120
5APN|1|5|A|121
5APN|1|5|A|122
5APN|1|5|A|123
5APN|1|5|U|124
*
5APN|1|5|A|144
5APN|1|5|G|145
5APN|1|5|U|146
5APN|1|5|U|147
5APN|1|5|G|148
5APN|1|5|U|149
5APN|1|5|A|150
5APN|1|5|A|151
5APN|1|5|U|152
5APN|1|5|U|153
5APN|1|5|U|154
5APN|1|5|G|155
5APN|1|5|G|156
5APN|1|5|A|157
5APN|1|5|G|158
*
5APN|1|5|C|263
5APN|1|5|G|264
5APN|1|5|A|265
5APN|1|5|A|266
5APN|1|5|G|267
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
Coloring options: