J3_5APN_025
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- AC*GAUACGUAA*UCGAAUCU
- Length
- 19 nucleotides
- Bulged bases
- 5APN|1|8|U|60, 5APN|1|8|C|62, 5APN|1|8|G|95
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5APN|1|8|A|44
5APN|1|8|C|45
*
5APN|1|8|G|58
5APN|1|8|A|59
5APN|1|8|U|60
5APN|1|8|A|61
5APN|1|8|C|62
5APN|1|8|G|63
5APN|1|8|U|64
5APN|1|8|A|65
5APN|1|8|A|66
*
5APN|1|8|U|93
5APN|1|8|C|94
5APN|1|8|G|95
5APN|1|8|A|96
5APN|1|8|A|97
5APN|1|8|U|98
5APN|1|8|C|99
5APN|1|8|U|100
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- 60S ribosomal protein L25
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
Coloring options: