J3_5APN_028
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 5APN|1|5|A|2703, 5APN|1|5|A|2705
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APN_028 not in the Motif Atlas
- Homologous match to J3_8P9A_062
- Geometric discrepancy: 0.0992
- The information below is about J3_8P9A_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_61124.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5APN|1|5|C|2664
5APN|1|5|U|2665
5APN|1|5|C|2666
*
5APN|1|5|G|2690
5APN|1|5|A|2691
5APN|1|5|A|2692
*
5APN|1|5|U|2701
5APN|1|5|A|2702
5APN|1|5|A|2703
5APN|1|5|A|2704
5APN|1|5|A|2705
5APN|1|5|G|2706
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
- Chain T
- 60S ribosomal protein L21-A
- Chain o
- 60S ribosomal protein L42-A
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