J3_5APO_003
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_003 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.105
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5APO|1|5|U|829||||P_1
5APO|1|5|A|830||||P_1
5APO|1|5|G|831||||P_1
*
5APO|1|5|C|863||||P_1
5APO|1|5|G|864||||P_1
5APO|1|5|U|865||||P_1
5APO|1|5|A|866||||P_1
5APO|1|5|G|867||||P_1
*
5APO|1|5|U|892||||P_1
5APO|1|5|C|893||||P_1
5APO|1|5|G|894||||P_1
5APO|1|5|A|895||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain R
- 60S ribosomal protein L19-A
- Chain g
- 60S ribosomal protein L34-A
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