J3_5APO_004

3D structure

PDB id

5APO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.41 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5APO_004 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.1993

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

5APO|1|5|G|1230||||P_1
5APO|1|5|A|1231||||P_1
5APO|1|5|C|1232||||P_1
*
5APO|1|5|G|1256||||P_1
5APO|1|5|C|1257||||P_1
5APO|1|5|U|1258||||P_1
5APO|1|5|A|1259||||P_1
5APO|1|5|A|1260||||P_1
5APO|1|5|G|1261||||P_1
5APO|1|5|G|1262||||P_1
*
5APO|1|5|C|1277||||P_1
5APO|1|5|A|1278||||P_1
5APO|1|5|C|1279||||P_1

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain q

60S acidic ribosomal protein P0