J3_5APO_017
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 5APO|1|5|A|607||||P_1
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_017 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0864
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5APO|1|5|U|502||||P_1
5APO|1|5|C|503||||P_1
*
5APO|1|5|G|588||||P_1
5APO|1|5|A|589||||P_1
5APO|1|5|G|590||||P_1
5APO|1|5|G|591||||P_1
5APO|1|5|A|592||||P_1
5APO|1|5|C|593||||P_1
5APO|1|5|U|594||||P_1
5APO|1|5|G|595||||P_1
5APO|1|5|C|596||||P_1
5APO|1|5|G|597||||P_1
*
5APO|1|5|C|606||||P_1
5APO|1|5|A|607||||P_1
5APO|1|5|A|608||||P_1
5APO|1|5|G|609||||P_1
5APO|1|5|G|610||||P_1
5APO|1|5|A|611||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S RIBOSOMAL PROTEIN EL6
- Chain F
- 60S ribosomal protein L7-A
- Chain e
- 60S ribosomal protein L32
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