J3_5APO_019
3D structure
- PDB id
- 5APO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.41 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5APO_019 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.083
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_31965.2
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
5APO|1|5|U|1526||||P_1
5APO|1|5|C|1527||||P_1
5APO|1|5|G|1528||||P_1
5APO|1|5|A|1529||||P_1
5APO|1|5|U|1530||||P_1
5APO|1|5|C|1531||||P_1
*
5APO|1|5|G|1591||||P_1
5APO|1|5|G|1592||||P_1
5APO|1|5|A|1593||||P_1
5APO|1|5|A|1594||||P_1
5APO|1|5|U|1595||||P_1
*
5APO|1|5|A|1612||||P_1
5APO|1|5|A|1613||||P_1
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
- Chain k
- 60S ribosomal protein L38
- Chain l
- 60S ribosomal protein L39
Coloring options: