3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UCGAUC*GGAAU*AA
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_31965.2
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW-F
Number of instances in this motif group
6

Unit IDs

8P9A|1|AR|U|1526
8P9A|1|AR|C|1527
8P9A|1|AR|G|1528
8P9A|1|AR|A|1529
8P9A|1|AR|U|1530
8P9A|1|AR|C|1531
*
8P9A|1|AR|G|1591
8P9A|1|AR|G|1592
8P9A|1|AR|A|1593
8P9A|1|AR|A|1594
8P9A|1|AR|U|1595
*
8P9A|1|AR|A|1612
8P9A|1|AR|A|1613

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain AT
5.8S ribosomal RNA; 5.8S rRNA
Chain CZ
60S ribosomal protein L25
Chain DI
60S ribosomal protein L34-A
Chain DM
60S ribosomal protein L38
Chain DN
60S ribosomal protein L39

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1916 s